Consensus splice site.

diff --git a/biblio/32085510.mdwn b/biblio/32085510.mdwn
new file mode 100644 (file)
index 0000000..7fb36d0
--- /dev/null
+++ b/biblio/32085510.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Animal, Fungi, and Plant Genome Sequences Harbor Different Non-Canonical Splice Sites."]]
+[[!tag Oikopleura]]
+
+Frey K, Pucker B.
+
+Cells. 2020 Feb 18;9(2). pii: E458. doi:10.3390/cells9020458
+
+Animal, Fungi, and Plant Genome Sequences Harbor Different Non-Canonical Splice Sites.
+
+[[!pmid 32085510 desc="A bioinformatics screen confirms the increased use of GA/AG splicing in _Oikopleura dioica_ and the copepod _Eurytemora affinis_, out of 489 animal species.  In both cases, an extended consensus was found: AG|GAA/AG (vertical bar is end of exon)."]]

diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index ce1d0d6d5294e3e2db9da6ed81ba958c8a5b9d3a..750919a6f45f8648c223d32566021a4de6462203 100644 (file)
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -119,6 +119,8 @@ Genome
    (more than 10%) of the (...) introns displayed non-canonical (non GT-AG)
    splice sites, whereas the usual proportion is around 1%-1.5% in other genomes”
    ([[Denoeud et al., 2010|biblio/21097902]]).
+ - The consensus sequence around GA/AG splice sites is AG|GAA/AG
+   ([[Frey and Pucker, 2020|biblio/32085510]].
  - Operons are enriched for houskeeping genes and depleted for developmental genes
    ([[Denoeud et al., 2010|biblio/21097902]]).
  - “LTR retrotransposons account for a significant part of the indel polymorphism