[[!meta title="Detection of the 5'-cap structure of messenger RNAs with the use of the cap-jumping approach."]]
[[!tag cap method]]
+
+Efimov VA, Chakhmakhcheva OG, Archdeacon J, Fernandez JM, Fedorkin ON, Dorokhov YL, Atabekov JG.Efimov VA1, Chakhmakhcheva OG, Archdeacon J, Fernandez JM, Fedorkin ON, Dorokhov YL, Atabekov JG.
+
+Nucleic Acids Res. 2001 Nov 15;29(22):4751-9.
+
+Detection of the 5'-cap structure of messenger RNAs with the use of the cap-jumping approach.
+
[[!pmid 11713326 desc="Binds an oligonucleotide to the cap using its free diol group, and integrates its sequence to the full-length cDNA using template-switching."]]
the first-strand cDNA, ligate a double-stranded adapter ending with a
single-strand (T)TTTGGG overhang, and prime second-strand synthesis.
+ - Cap-jumping ([[Efimov et al., 2001|biblio/11713326]]): oxidize diols,
+ covalently bind a 3′-amine oligonucleotide. The [[reverse_transcriptase]]
+ ireads through the cap structure and chemical bond, and integrates the reverse
+ complement of the oligonucleotide to the first-strand cDNA.
+
- [[Cleptet et al., 2004|biblio/14704363]] modified oligo-capping, to use T4
DNA ligase and a double-stranded adapter with NNNNNN overhang instead of T4
RNA ligase and a single-stranded linker.