RNL2 etc.

diff --git a/biblio/15205470.mdwn b/biblio/15205470.mdwn
index eae98df5a16b8007b03389b37bf5133301d07290..e53f0f382ef994acec83905b37c88a136767bcf6 100644 (file)
--- a/biblio/15205470.mdwn
+++ b/biblio/15205470.mdwn
@@ -1,5 +1,5 @@
 [[!meta title="Direct labeling of RNA with multiple biotins allows sensitive expression profiling of acute leukemia class predictor genes."]]
-[[!tag ligation]]
+[[!tag ligase]]
 
 Nucleic Acids Res. 2004 Jun 17;32(11):e86 doi:10.1093/nar/gnh085
 

diff --git a/biblio/15247329.mdwn b/biblio/15247329.mdwn
index 449750ae82fd9d1097d1f8a72fa82f1e8a8c3b8f..5170fe6003b09c533f3ab4eab663a54370fc9615 100644 (file)
--- a/biblio/15247329.mdwn
+++ b/biblio/15247329.mdwn
@@ -1,5 +1,5 @@
 [[!meta title="Increasing the efficiency of SAGE adaptor ligation by directed ligation chemistry."]]
-[[!tag method library ligation]]
+[[!tag method library ligase]]
 
 So AP, Turner RF, Haynes CA.
 

diff --git a/biblio/17018278.mdwn b/biblio/17018278.mdwn
new file mode 100644 (file)
index 0000000..717d7bc
--- /dev/null
+++ b/biblio/17018278.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="RNA ligase structures reveal the basis for RNA specificity and conformational changes that drive ligation forward."]]
+[[!tag ligase]]
+
+Nandakumar J, Shuman S, Lima CD.
+
+Cell. 2006 Oct 6;127(1):71-84
+
+RNA ligase structures reveal the basis for RNA specificity and conformational changes that drive ligation forward.
+
+[[!pmid 17018278 desc="Structure-function analysis of sealing of nicked duplexes."]]

diff --git a/biblio/17510325.mdwn b/biblio/17510325.mdwn
index 4e7776584b81ab9fd523eb652c617cb6391aedf1..1e457671b7ee9e06b24858ba303957416f82a74c 100644 (file)
--- a/biblio/17510325.mdwn
+++ b/biblio/17510325.mdwn
@@ -1,5 +1,5 @@
 [[!meta title="RNA maps reveal new RNA classes and a possible function for pervasive transcription."]]
-[[!tag ligation transcriptome small_RNA HepG2]]
+[[!tag ligase transcriptome small_RNA HepG2]]
 
 Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermüller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, Helt G, Ganesh M, Ghosh S, Piccolboni A, Sementchenko V, Tammana H, Gingeras TR.
 

diff --git a/biblio/21722378.mdwn b/biblio/21722378.mdwn
new file mode 100644 (file)
index 0000000..f23d364
--- /dev/null
+++ b/biblio/21722378.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="T4 RNA Ligase 2 truncated active site mutants: improved tools for RNA analysis"]]
+[[!tag ligase method enzyme]]
+
+Viollet S, Fuchs RT, Munafo DB, Zhuang F, Robb GB.
+
+BMC Biotechnol. 2011 Jul 1;11:72. doi: 10.1186/1472-6750-11-72.
+
+T4 RNA Ligase 2 truncated active site mutants: improved tools for RNA analysis
+
+[[!pmid 21722378 desc="The K227Q mutation prevents transfer of the adenylyl residue from the adapter to unwanted targets."]]

diff --git a/biblio/4000951.mdwn b/biblio/4000951.mdwn
index 7ea3887180686d9bde28cb71b63b61af174c259e..5214692c087fed6da442438f10f9ec8e81453cb4 100644 (file)
--- a/biblio/4000951.mdwn
+++ b/biblio/4000951.mdwn
@@ -1,5 +1,5 @@
 [[!meta title="Hexamine cobalt chloride promotes intermolecular ligation of blunt end DNA fragments by T4 DNA ligase."]]
-[[!tag ligation method]]
+[[!tag ligase method]]
 
 Nucleic Acids Res. 1985 Mar 25;13(6):1997-2008.
 

diff --git a/biblio/To_Do b/biblio/To_Do
index 20363d950587b1d9ad8a2af224afd7fcb768665a..d8454347f30e1d12e41cd5298875ca052ee492f8 100644 (file)
--- a/biblio/To_Do
+++ b/biblio/To_Do
@@ -700,9 +700,6 @@ Reommends to use only dbSNP entries which have a phred score higher than 40.
 15693942 [mining]
 Uses a highly replicated experimental desigh to show that metabolic genes vary in their expresison between tissues, individuals and populations.
 
-17018278 [enzymes]
-Not Read
-
 16698958 [enhancers]
 Defines the concept of "maximal N-mers".
 

diff --git a/tags/ligase.mdwn b/tags/ligase.mdwn
index 90de02b46c3dd128d2ca4b3a23912129fe86e070..2490e339b577042a9c32a9a5133cdbeab4a85ba2 100644 (file)
--- a/tags/ligase.mdwn
+++ b/tags/ligase.mdwn
@@ -1,4 +1,13 @@
 [[!meta title="pages tagged ligase"]]
 
-[[!inline pages="tagged(ligase)" actions="no" archive="yes"
-feedshow=10]]
+Work in progress.
+
+On T4 RNL2:
+
+ - Functional residues analysed by [[Yin et al., 2003|biblio/12611899]].
+ - The truncated Rnl2 was published by [[Ho et al., 2004|biblio/14962393]].
+ - The K227Q mutation prevents transfer of the andenylyl residue from the
+   linker to RNA ends, thus prevents unwanted ligation products. 
+   [[Viollet et al., 2011|biblio/21722378]]
+
+[[!inline pages="tagged(ligase)" limit=0]]