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diff --git a/biblio/10.1101_817783.mdwn b/biblio/10.1101_817783.mdwn
deleted file mode 100644 (file)
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--- a/biblio/10.1101_817783.mdwn
+++ /dev/null
@@ -1,10 +0,0 @@
-[[!meta title="Evolution of multiple CDK1 paralogs towards specializations in late cell cycle events in a lineage with fast developing planktonic embryos."]]
-[[!tag Oikopleura bioRxiv]]
-
-bioRxiv 817783; doi: https://doi.org/10.1101/817783 
-
-Xiaofei Ma. Jan Inge Øvrebø, Eric M Thompson.
-
-Evolution of multiple CDK1 paralogs towards specializations in late cell cycle events in a lineage with fast developing planktonic embryos.
-
-[[!doi 10.1101/817783 desc="“Interspecies clustering of CDK1 paralogs [show] conservation of their intron-exon structures”  “_O. dioica_ CDK1a and b locate on the same autosome whereas CDK1c is present on a different autosome that also contains CDK1e. CDK1d is found on the X chromosome where, at a distance of 5 MB, the CycBa locus is also located.”  “The PSTAIRE helix is modified in all Oikopleura CDK1 paralogs whereas Oikopleura CDK2s retain the canonical PSTAIRE sequence. All of the 17 identified Oikopleura CDK1 sequences share the A48S substitution.”"]]

diff --git a/biblio/35155443.mdwn b/biblio/35155443.mdwn
index 17fb5b87e3ec26c68eb550bda942ffd416256fb7..b72efcd0eeef50b1517f36d207098effdbe20262 100644 (file)
--- a/biblio/35155443.mdwn
+++ b/biblio/35155443.mdwn
@@ -7,10 +7,17 @@ Front Cell Dev Biol. 2022 Jan 28;9:770939. doi:10.3389/fcell.2021.770939
 
 Evolution of CDK1 Paralog Specializations in a Lineage With Fast Developing Planktonic Embryos.
 
-[[!pmid desc="The last common ancestors of all oiks probably had only one CDK1
-as _Fritillaria borealis_ also has only 1.  Oiks in general have 3 paralogs
-(_a_, _b_, _c_), and _O. dioica_ has 5 (_a_, _b_, _c_, plus _d_ and _e_ which
-appear to originate from _c_).  They are found on chr1 (_c_, _e_), chr2, (_a_,
-_b_) and the XSR of chr3 (_d_).  CycBa is also found on the XSR, and interacts
-with CDK1d for functions essential to meiosis of oocytes.  In contrary to the
-ancestral CDK1 in other animals, the levels of CDK1d oscillate."]]
+[[!pmid 35155443 desc="The last common ancestors of all oiks probably had only
+one CDK1 as _Fritillaria borealis_ also has only 1.  Oiks in general have 3
+paralogs (_a_, _b_, _c_), and _O. dioica_ has 5 (_a_, _b_, _c_, plus _d_ and
+_e_ which appear to originate from _c_).  They are found on chr1 (_c_, _e_),
+chr2, (_a_, _b_) and the XSR of chr3 (_d_).  CycBa is also found on the XSR,
+and interacts with CDK1d for functions essential to meiosis of oocytes.  In
+contrary to the ancestral CDK1 in other animals, the levels of CDK1d oscillate.
+“Interspecies clustering of CDK1 paralogs [show] conservation of their
+intron-exon structures” “O. dioica CDK1a and b locate on the same autosome
+whereas CDK1c is present on a different autosome that also contains CDK1e.
+CDK1d is found on the X chromosome where, at a distance of 5 MB, the CycBa
+locus is also located.” “The PSTAIRE helix is modified in all Oikopleura CDK1
+paralogs whereas Oikopleura CDK2s retain the canonical PSTAIRE sequence. All of
+the 17 identified Oikopleura CDK1 sequences share the A48S substitution.”"]]

diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index a05e4d9f4ed182cdcdbed632dac3cb551528e6cf..246fb151c88acd99e771ea7ffef01d6cfae606f8 100644 (file)
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -211,7 +211,7 @@ Genes and pathways
    [[Feng & Thompson, 2018|biblio/29969934]]).
  - _O. dioica_ CDK1a and b locate on LG2; CDK1c and is CDK1e on LG1.
    CDK1d is on the X chromosome near CycBa.  In _O. albicans_, CDK1a,b and c are
-   on the same chromosome ([[Ma, Øvrebø and Thompson, 2019|biblio/10.1101_817783]]).
+   on the same chromosome ([[Ma, Øvrebø and Thompson, 2022|biblio/35155443]]),
  - _O. dioica_, like other deuterostomes, has acid-sensing ion channels (ASICs).
    They are expressed in the nervous system ([[Lynagh et al., 2018|biblio/30061402]]).
  - Some muscle genes were duplicated in the _Oikopleura_ stem lineage