Nettoyage.

diff --git a/biblio/To_Do b/biblio/To_Do
index ed0970ed070902e627a1c5bc0fbc00f3816d7872..584dd854b1e27caf0a3e39604166cacaaf58d5e4 100644 (file)
--- a/biblio/To_Do
+++ b/biblio/To_Do
@@ -46,9 +46,6 @@ Noise due to RNA extraction is 40 times greater than noise due to replicate hybr
 12595569 [amplificaiton]
 Aminoallyl UTP to labal cRNAs. In contrast to cDNAs, DMSO is required for subsequent cyanine labelling.
 
-11955710 [visual cortex]
-Cat visual cortex cDNAs hybridized to human macroarrays to study critical period mechanism
-
 11222780 [amplification]
 T7 pol generates aberrant template-unrelated products. This is fixed by reducing the concentration of oligo dT primers, and of enzymes. Under these conditions, 2 rounds of RNA linear amplification is not generatng too much bias. Small-volume protocol. T4gp32, a single stranded protein, increases RT processivity.
 
@@ -154,9 +151,6 @@ Apical localisation increases the robustness of development (more segmenatal def
 14732405 [promoters]
 Pax6 has at least two transcription start sites.
 
-15345244 [visual cortex]
-Differential display. Age-dependant variations account for 6.5% of the variations.
-
 15196954 [enhancers] [review]
 Gene networks.
 
@@ -169,9 +163,6 @@ Dual strategy using full length cDNAs and whole genome tiling arrays to annotate
 15001784 [networks] [tracked]
 Distribution of triads and tetrads in networks can cluster them in functional classes.
 
-15295028 [visual cortex] [tracked]
-Synaptic changes in dark-reared animals stimulated by 6 hours of light before sacrifice.
-
 15208707 [networks]
 
 4599081 [crick]
@@ -277,9 +268,6 @@ Alternative promoters which transcribe variants with different translational eff
 15342556 [genome]
 These blocks contain most validated and predicted transcription factor binding sites.
 
-15509747 [visual cortex]
-Another slightly different critical period, and another PV:GFP transgene.
-
 15849325 [genome]
 Proteomics to demonstrate that some short ORFs are translated.
 
@@ -394,9 +382,6 @@ Coordinated expression of e and y is necessary for spot formation. Ancestral pat
 15282333 [networks]
 CDS, 3'UTRs, but not 5'UTRs of highly connected genes of  the human and mouse coexpression networks evolve more slowly
 
-15009647 [visual cortex]
-Identifies immediate early genes that are upregulated in visual cortex after monocular enucleation.
-
 15860629 [networks]
 Model of network growth which takes into account the propension to link to newcommers or to good old friends.
 
@@ -436,9 +421,6 @@ The cells were pulled out from midly digested ganglia with glass microelectrodes
 15371555 [tags]
 Semi-random priming: the 5' oligo is N6-NlaIII.
 
-15901564 [visual cortex]
-OBCAM RNA and protein levels are higher juvenile and dark reared adults, compared to light reared adults.
-
 15911778 [networks]
 The muticommunauty structure of the air transortation network  explains why some cities with a high centrality are not hubs.
 
@@ -541,9 +523,6 @@ Usage of "Bayes Error Rate" instead of a cutoff on p-values. R packaged availabl
 16103215 [misc]
 Supports the idea that the only function of some RNA is to have been transcribed.
 
-16107646 [visual cortex]
-Substracted library spotted on microarrays.
-
 16094371 [networks]
 Functional validation.
 
@@ -565,9 +544,6 @@ Sequence surrounding UCRs might regulate negatively their activity.
 16141073 [genome]
 S/AS pairs usually show positive correlation of their expression.
 
-16195464 [visual cortex]
-Loss of function delays the closure of the critical period.
-
 16168087 [networks]
 Different collaboration network in different research consortiums.
 
@@ -670,15 +646,6 @@ Not read. Deletion of an enhancer conserved in mouse and chicken and its phenoty
 14701942 [enhancers]
 Not read. A pdx-1 enhancer conserved in human, mouse and chicken.
 
-10408598 [visual cortex]
-Not read. egr1 is down-regulated in dark-reared rats.
-
-11739581 [visual cortex]
-Not read. Phenotype of the egr1 KO for the activity-dependant plasticity in the visual cortex.
-
-8656291 [visual cortex]
-not read. Nuclear extracts from dark reared rats have a lesser binding activity to an egr1 probe.
-
 16314298 [protocols]
 Adding gold in PCR tubes enhances the yield when the cycling is quick.
 
@@ -742,9 +709,6 @@ Not read. Enhancers of Krox-20, conserved between chicken and mouse.
 16527264 [enhancers]
 Not read. An enhancer of Rpx/Hesx1 conserved between mouse and xenopus.
 
-16540572 [visual cortex]
-Not read. Monocular deprivation can lead to shifts in ocular dominance in adults if they are deprived of visual stumuli 10 days before the experiment...
-
 16540077 [misc]
 The PPi produced during the PCR can be removed with the pyrosequencing enzymes themselves. The antarctic phosphatase from NEB was not very efficient at this task.
 
@@ -781,12 +745,6 @@ By weakening the DNA-protein interaction, the authors acheived the suppression o
 16618967 [enzymes]
 The combined use of a complementary DNA oligo and DNA ligase suppresses the artifacts seen in RNA ligase adenylation.
 
-16709670 [visual cortex]
-Weakening the extracellular matrix influences the plasticity process.
-
-16723524 [visual cortex]
-Publicly available cell-type-specific expression patterns were used to analyse the results of whole-tissue microarray experiments.
-
 16344560 [alternative promoters]
 Detected an average of 3.1 promoters per gene.
 
@@ -1096,9 +1054,6 @@ Primary paper for CLICs (clusters in conservation).
 17284453 [misc]
 [not read] The 3' end of RefSeq protein-coding genes is enriched in putative binding sites (the 5' as well).
 
-17510325 [transcriptome]
-Small RNAs were directly labelled with pCpBiotin.
-
 18024554 [tags]
 A sort of Superverylong 3'SAGE.