Café and foccacia

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+[[!meta title="Improving Phylogenies Based on Average Nucleotide Identity, Incorporating Saturation Correction and Nonparametric Bootstrap Support"]]
+[[!tag ANI]]
+
+Gosselin S, Fullmer MS, Feng Y, Gogarten JP.
+
+Improving Phylogenies Based on Average Nucleotide Identity, Incorporating Saturation Correction and Nonparametric Bootstrap Support.
+
+Syst Biol. 2022 Feb 10;71(2):396-409. doi:10.1093/sysbio/syab060
+
+[[!pmid 34289044 desc="“The distance (abbreviated Total Average Nucleotide Identity, or tANI) was calculated by using the formula: tANI  -ln(AF*ANI). The natural log added to this calculation counteracts saturation for low AF*ANI values” Mostly tested on bacteria but also briefly on primates and yeasts"]]

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+[[!meta title="Haplotype-resolved genomes provide insights into the origins and functional significance of genome diversity in bivalves."]]
+[[!tag cephalochordate pangenome]]
+
+Liu S, Shi C, Chen C, Tan Y, Tian Y, Macqueen DJ, Li Q.
+
+Cell Rep. 2025 May 27;44(5):115697. doi:10.1016/j.celrep.2025.115697
+
+Haplotype-resolved genomes provide insights into the origins and functional significance of genome diversity in bivalves.
+
+[[!pmid 40349337 desc=""]]