Consolidation repeats transposon.

diff --git a/biblio/15380082.mdwn b/biblio/15380082.mdwn
new file mode 100644 (file)
index 0000000..d8c9b62
--- /dev/null
+++ b/biblio/15380082.mdwn
@@ -0,0 +1,8 @@
+[[!meta title="Sex determination: primitive Y chromosomes in fish."]]
+[[!tag review transposon]]
+
+Charlesworth B.
+
+Curr Biol. 2004 Sep 21;14(18):R745-7.
+
+[[!pmid 15380082 desc="A common feature of sex-determination loci is X/Y crossing-over inhibition, followed by divergence, and accumulation of transposons and other repetitive elements the Y locus."]]

diff --git a/biblio/15469847.mdwn b/biblio/15469847.mdwn
index 307a01cd91515f5daa0bbe33cd757b50a3debeac..c0ec6b0fd9c7a5065bf7d8c1cab00c0ac57f260f 100644 (file)
--- a/biblio/15469847.mdwn
+++ b/biblio/15469847.mdwn
@@ -1,3 +1,3 @@
 [[!meta title="Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos."]]
-[[!tag promoter repeats embryo]]
+[[!tag promoter transposon embryo]]
 [[!pmid 15469847 desc="Transcription initiation start sites in transposons can be alternative promoters for many genes in the mouse oocytes."]]

diff --git a/biblio/16141074.mdwn b/biblio/16141074.mdwn
new file mode 100644 (file)
index 0000000..dc9bb45
--- /dev/null
+++ b/biblio/16141074.mdwn
@@ -0,0 +1,8 @@
+[[!meta title="Elucidation of the small RNA component of the transcriptome."]]
+[[!tag miRNA arabidopsis transposon]]
+
+Lu C, Tej SS, Luo S, Haudenschild CD, Meyers BC, Green PJ.
+
+Elucidation of the small RNA component of the transcriptome.
+
+[[!pmid 16141074 desc="Many small RNAs match transposons or intergenic regions."]]

diff --git a/biblio/16365385.mdwn b/biblio/16365385.mdwn
new file mode 100644 (file)
index 0000000..13c9348
--- /dev/null
+++ b/biblio/16365385.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Transposon-free regions in mammalian genomes."]]
+[[!tag not_read transposon enhancer]]
+
+Simons C, Pheasant M, Makunin IV, Mattick JS.
+
+Genome Res. 2006 Feb;16(2):164-72. Epub 2005 Dec 19.
+
+Transposon-free regions in mammalian genomes.
+
+[[!pmid 16365385 desc="Transposon-free regions are enriched with developmental regulators."]]

diff --git a/biblio/19487571.mdwn b/biblio/19487571.mdwn
index 19b2b4c23714bc845f683913793e23a8b1817a12..a7067d43ff4d63b87ee3bb281de787750f7c52f0 100644 (file)
--- a/biblio/19487571.mdwn
+++ b/biblio/19487571.mdwn
@@ -1,3 +1,3 @@
 [[!meta title="L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism."]]
-[[!tag transposons RNA-inheritance]]
+[[!tag transposon RNA-inheritance]]
 [[!pmid 19487571 desc="L1 RNA carried over from germ cells is detected until preimplementation stages but not at E10.5, and is able to retrotranspose."]]

diff --git a/biblio/21041477.mdwn b/biblio/21041477.mdwn
index c5bcffa8978015657906e4cc783deaef5cef6ebb..647f850324ddfcfdb5fbb224512b2be35a31b11f 100644 (file)
--- a/biblio/21041477.mdwn
+++ b/biblio/21041477.mdwn
@@ -1,3 +1,3 @@
 [[!meta title="Epigenetic control of retrotransposon expression in human embryonic stem cells."]]
-[[!tag repeats embryo not_read]]
+[[!tag transposon embryo not_read]]
 [[!pmid 21041477 desc="‘expressed Alu elements are enriched in the youngest subfamily Y, and that expressed L1s are mostly located within genes, suggesting an epigenetic control of retrotransposon expression in hESCs’"]]

diff --git a/biblio/21297615.mdwn b/biblio/21297615.mdwn
index d1dc1a3f317dd7a13a74e0b5148f0bd6b2554f3d..1eb6a3e1d2af69cbdc70cdde0b75b4b3f32b2d47 100644 (file)
--- a/biblio/21297615.mdwn
+++ b/biblio/21297615.mdwn
@@ -1,3 +1,3 @@
 [[!meta title="DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration."]]
-[[!tag not_read repeats miRNA]]
-[[!pmid 21297615 desc="Pathology modelled in mouse with the B1 and B2 repeats."]]
+[[!tag not_read transposon miRNA]]
+[[!pmid 21297615 desc="Pathology modelled in mouse with the B1 and B2 transposon."]]

diff --git a/biblio/21382548.mdwn b/biblio/21382548.mdwn
index c018ec48fb95a3ab65b8b0011b53f8046463252c..7a87ce312d9c4365ff15c6fbdc6b55f133df7b9c 100644 (file)
--- a/biblio/21382548.mdwn
+++ b/biblio/21382548.mdwn
@@ -1,3 +1,3 @@
 [[!meta title="Cytoplasmic Intron Sequence-Retaining Transcripts Can Be Dendritically Targeted via ID Element Retrotransposons."]]
-[[!tag repeats dendrite]]
+[[!tag transposon dendrite]]
 [[!pmid 21382548 desc="Proper secondary structure looks necessary."]]

diff --git a/biblio/4874239.mdwn b/biblio/4874239.mdwn
index 79ddec4bc5858229f3e57af60ec47bd173c2e66a..6773a4272a7af2a52c35e831b4720bef265609d1 100644 (file)
--- a/biblio/4874239.mdwn
+++ b/biblio/4874239.mdwn
@@ -1,3 +1,3 @@
 [[!meta title="Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms."]]
-[[!tag hybridisation repeats]]
+[[!tag hybridisation transposon]]
 [[!pmid 4874239 desc="C0t"]]

diff --git a/biblio/To_Do b/biblio/To_Do
index c93d78e88037bac86604931e145507dc252c0f38..7ac6c309a1ab7db8cebf7bf2a4372e52673c4e44 100644 (file)
--- a/biblio/To_Do
+++ b/biblio/To_Do
@@ -234,9 +234,6 @@ Says that alpha-keratin is more likely to have coiled-coiled structure, rather t
 15280214 [misc] [tracked]
 Apical localisation increases the robustness of development (more segmenatal defects in egl hypomorphs). It could prevent mRNA dillution in the blastoderm of Drosophila.
 
-15380082 [misc] [review]
-A common feature of sex-determination loci is X/Y crossing-over inhibition, followed by divergence, and accumulation of transposons and other junks in the Y locus.
-
 14732405 [promoters]
 Pax6 has at least two transcription start sites.
 
@@ -879,9 +876,6 @@ Idenification of conserved enhancers of shh hundreds of kp far of the coding seq
 16141076 [miRNA]
 Not read. A liver miRNA which facilitates the replication of a virus.
 
-16365385 [enhancers]
-Not read. Transposon-free regions are enriched with developmental regulators.
-
 16380714 [enhancers]
 There are statistically significantly less SNPs in the conserved non coding regions of the human genome. This difference is weakest in the elements located more than 10 kbp upstream of the promoter.
 
@@ -918,9 +912,6 @@ Proposing a distributed research system similar to distributed computing, and di
 16336043 [misc]
 The human faeces might be a vector of infections plant RNA viruses.
 
-16141074 [miRNA]
-Many small RNAs match transposons or intergenic regions.
-
 16489339 [tags]
 Protocol with random primers