Cleanup, simplification, consolidation.

diff --git a/biblio/18615017.mdwn b/biblio/18615017.mdwn
index 03256b31f23eac2d6ee07b413fef73f833fdb730..dc995b64cafdff99fd3a9c9792cce63b9407ea08 100644 (file)
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@@ -1,5 +1,5 @@
 [[!meta title="High-resolution mapping of meiotic crossovers and non-crossovers in yeast."]]
-[[!tag Yeast chromosome microarray genetics]]
+[[!tag yeast chromosome microarray genetics]]
 
 Mancera E, Bourgon R, Brozzi A, Huber W, Steinmetz LM.
 

diff --git a/biblio/20937878.mdwn b/biblio/20937878.mdwn
index c66e29a92daee0142f4012436daf0892a0ab020d..7e6cf7d35ccdb61f272cb471da8063911ef97446 100644 (file)
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@@ -1,3 +1,3 @@
 [[!meta title="Cell-permeable Foxp3 protein alleviates autoimmune disease associated with inflammatory bowel disease and allergic airway inflammation."]]
-[[!tag lymphocyte FoxP3 Treg therapy]]
+[[!tag lymphocyte FoxP3 therapy]]
 [[!pmid 20937878 desc=""]]

diff --git a/biblio/22761473.mdwn b/biblio/22761473.mdwn
index 316bb18639fbb0f3ba78fa501e73e0b5d4cb4919..72cc0c2169f538be88a0f47415bf93ae50965e35 100644 (file)
--- a/biblio/22761473.mdwn
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@@ -1,5 +1,5 @@
 [[!meta title="A New Approach to Simultaneously Quantify Both TCR α- and β-Chain Diversity after Adoptive Immunotherapy."]]
-[[!tag TCR clonotype]]
+[[!tag TCR repertoire]]
 
 Zhang M, Maiti S, Bernatchez C, Huls H, Rabinovich B, Champlin RE, Vence LM, Hwu P, Radvanyi L, Cooper LJ.
 
@@ -7,4 +7,4 @@ Clin Cancer Res. 2012 Sep 1;18(17):4733-42.
 
 A New Approach to Simultaneously Quantify Both TCR α- and β-Chain Diversity after Adoptive Immunotherapy.
 
-[[!pmid 22761473 desc="Using “NanoStrings” to count α and β segments."]]
+[[!pmid 22761473 desc="Using “NanoStrings” to count α and β segments.  Clonotypes"]]

diff --git a/biblio/22933635.mdwn b/biblio/22933635.mdwn
index 1e1e7216a39270a83b4168e242f0b89ddb26da71..2cd52b7ecfdbebac2cb99ac1a0e2d76bf160c051 100644 (file)
--- a/biblio/22933635.mdwn
+++ b/biblio/22933635.mdwn
@@ -1,5 +1,5 @@
 [[!meta title="The TCR repertoires of regulatory and conventional T cells specific for the same foreign antigen are distinct."]]
-[[!tag mouse Treg TCR α_chain repertoire]]
+[[!tag mouse lymphocyte TCR α_chain repertoire]]
 
 Relland LM, Williams JB, Relland GN, Haribhai D, Ziegelbauer J, Yassai M, Gorski J, Williams CB.
 

diff --git a/biblio/23290140.mdwn b/biblio/23290140.mdwn
index 63804636f245c6ec70efc1f10a864fc8b0066cea..ea7d2d1f7ee2b93fc80167169e7e0695176cbf05 100644 (file)
--- a/biblio/23290140.mdwn
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@@ -1,5 +1,5 @@
 [[!meta title="Generation of rejuvenated antigen-specific T cells by reprogramming to pluripotency and redifferentiation."]]
-[[!tag iPS T_cell reprogramming]]
+[[!tag iPS lymphocyte reprogramming]]
 
 Nishimura T, Kaneko S, Kawana-Tachikawa A, Tajima Y, Goto H, Zhu D, Nakayama-Hosoya K, Iriguchi S, Uemura Y, Shimizu T, Takayama N, Yamada D, Nishimura K, Ohtaka M, Watanabe N, Takahashi S, Iwamoto A, Koseki H, Nakanishi M, Eto K, Nakauchi H.
 

diff --git a/biblio/24156252.mdwn b/biblio/24156252.mdwn
index aa7583ed8b963a4707382931491689b63326db96..4ee8ad7589467b9c8cea87fd3d231f304d79e4da 100644 (file)
--- a/biblio/24156252.mdwn
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@@ -1,5 +1,5 @@
 [[!meta title="Temporal dynamics and transcriptional control using single-cell gene expression analysis."]]
-[[!tag single_cell OSC CLST]]
+[[!tag single_cell OSC]]
 
 Kouno T, de Hoon M, Mar JC, Tomaru Y, Kawano M, Carninci P, Suzuki H, Hayashizaki Y, Shin JW.
 

diff --git a/biblio/27071608.mdwn b/biblio/27071608.mdwn
index f310317722dc64e2bfbae7ba5ffdd41e649f427f..69fcb3b89c4ed8e2fc3518f4355260530b559c76 100644 (file)
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@@ -1,5 +1,5 @@
 [[!meta title="Bioanalyzer chips can be used interchangeably for many analyses of DNA or RNA."]]
-[[!tag Bioanalyzer method]]
+[[!tag size method]]
 
 Davies J, Denyer T, Hadfield J
 

diff --git a/biblio/28623350.mdwn b/biblio/28623350.mdwn
index 49d9f8db5e9ea6b9a582a28df3c1c466a0eff0ae..c696260a7e4b4ef6475f31bad9c744741446b87b 100644 (file)
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 [[!meta title="Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids."]]
-[[!tag trans-splicing method random priming.]]
+[[!tag trans-splicing method random_priming]]
 
 Cuypers B, Domagalska MA, Meysman P, Muylder G, Vanaerschot M, Imamura H, Dumetz F, Verdonckt TW, Myler PJ, Ramasamy G, Laukens K, Dujardin JC.
 

diff --git a/biblio/33093512.mdwn b/biblio/33093512.mdwn
index 9e32a576647c923d58c9972485a7767d277d0afa..ab2bc18788e70ff7250c4b70bfc4aa47c5e08623 100644 (file)
--- a/biblio/33093512.mdwn
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@@ -1,5 +1,5 @@
 [[!meta title="Use of Cap Analysis Gene Expression to detect human papillomavirus promoter activity patterns at different disease stages."]]
-[[!tag RIKEN OIST nanoCAGE HPV]]
+[[!tag OIST nanoCAGE HPV]]
 
 Taguchi A, Nagasaka K, Plessy C, Nakamura H, Kawata Y, Kato S, Hashimoto K, Nagamatsu T, Oda K, Kukimoto I, Kawana K, Carninci P, Osuga Y, Fujii T.
 

diff --git a/biblio/8894123.mdwn b/biblio/8894123.mdwn
index 10498a0ffdea123d1edbafc6d0aa2a6b125b2696..116cd5f8c74b6a3f8e159bf1894c1d8d930d9b4e 100644 (file)
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+++ b/biblio/8894123.mdwn
@@ -1,5 +1,5 @@
 [[!meta title="Zipf-scaling behavior in the immune system."]]
-[[!tag T_cell repertoire scale-free]]
+[[!tag lymphocyte repertoire scale-free]]
 
 Burgos JD, Moreno-Tovar P.
 

diff --git a/tags/Bioanalyzer.mdwn b/tags/Bioanalyzer.mdwn
deleted file mode 100644 (file)
index 05e91ae..0000000
--- a/tags/Bioanalyzer.mdwn
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-[[!meta title="pages tagged Bioanalyzer"]]
-
-[[!inline pages="tagged(Bioanalyzer)" actions="no" archive="yes"
-feedshow=10]]

diff --git a/tags/CLST.mdwn b/tags/CLST.mdwn
deleted file mode 100644 (file)
index 4af404b..0000000
--- a/tags/CLST.mdwn
+++ /dev/null
@@ -1,4 +0,0 @@
-[[!meta title="pages tagged CLST"]]
-
-[[!inline pages="tagged(CLST)" actions="no" archive="yes"
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diff --git a/tags/RIKEN.mdwn b/tags/RIKEN.mdwn
deleted file mode 100644 (file)
index b77112a..0000000
--- a/tags/RIKEN.mdwn
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@@ -1,4 +0,0 @@
-[[!meta title="pages tagged RIKEN"]]
-
-[[!inline pages="tagged(RIKEN)" actions="no" archive="yes"
-feedshow=10]]

diff --git a/tags/T_cell.mdwn b/tags/T_cell.mdwn
deleted file mode 100644 (file)
index 1244a94..0000000
--- a/tags/T_cell.mdwn
+++ /dev/null
@@ -1,4 +0,0 @@
-[[!meta title="pages tagged T cell"]]
-
-[[!inline pages="tagged(T_cell)" actions="no" archive="yes"
-feedshow=10]]

diff --git a/tags/Treg.mdwn b/tags/Treg.mdwn
deleted file mode 100644 (file)
index 744bf6a..0000000
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+++ /dev/null
@@ -1,4 +0,0 @@
-[[!meta title="pages tagged Treg"]]
-
-[[!inline pages="tagged(Treg)" actions="no" archive="yes"
-feedshow=10]]

diff --git a/tags/clonotype.mdwn b/tags/clonotype.mdwn
deleted file mode 100644 (file)
index 25e9513..0000000
--- a/tags/clonotype.mdwn
+++ /dev/null
@@ -1,4 +0,0 @@
-[[!meta title="pages tagged clonotype"]]
-
-[[!inline pages="tagged(clonotype)" actions="no" archive="yes"
-feedshow=10]]

diff --git a/tags/priming..mdwn b/tags/priming..mdwn
deleted file mode 100644 (file)
index bee9db7..0000000
--- a/tags/priming..mdwn
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@@ -1,4 +0,0 @@
-[[!meta title="pages tagged priming."]]
-
-[[!inline pages="tagged(priming.)" actions="no" archive="yes"
-feedshow=10]]

diff --git a/tags/random.mdwn b/tags/random.mdwn
deleted file mode 100644 (file)
index ee7ac84..0000000
--- a/tags/random.mdwn
+++ /dev/null
@@ -1,4 +0,0 @@
-[[!meta title="pages tagged random"]]
-
-[[!inline pages="tagged(random)" actions="no" archive="yes"
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