scaffolders...

diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn
index 450bf877c6decd4fa32d64738ecf9434843e3b7c..9f9bd5b649ddeba832aec2514a0fc9e9bcdca790 100644 (file)
--- a/tags/assembly.mdwn
+++ b/tags/assembly.mdwn
@@ -21,13 +21,13 @@ Nagarajan and Šikić, 2017|biblio/28100585]]).
 When coverage is too low for efficient reference-free assembly, related
 references can be used as a guide.  The Ragout software ([[Kolmogorov and
 coll., 2014|biblio/24931998]], [[Kolmogorov and coll., 2018|biblio/30341161]])
-can take multiple reference genomes to guide the assembly of one target.
-Polymorphisms unique to the target genome can be recovered, but chromosome
-fusions are typically hard to detect.  Compared to version 1, version 2 infers
-phylogenetic relationships between the reference genomes automatically.  An
-alterative reference-guided assembler, RagOO ([[Alonge and coll.,
-2019|biblio/31661016]]) is reported to be faster, but can only take a single
-reference.
+can take multiple reference genomes to guide the scaffolding of a target
+assembly.  Polymorphisms unique to the target genome can be recovered, but
+chromosome fusions are typically hard to detect.  Compared to version 1,
+version 2 infers phylogenetic relationships between the reference genomes
+automatically.  An alterative reference-guided scaffolder, RagOO ([[Alonge and
+coll., 2019|biblio/31661016]]) is reported to be faster, but can only take a
+single reference.
 
 The HaploMerger2 pipeline ([[Huang and coll., 2017|biblio/28407147]]) takes a
 diploid assembly and outputs a reference and an alternative sub-assembly for