In GR

diff --git a/biblio/10.1101_2020.03.14.992248v3.mdwn b/biblio/10.1101_2020.03.14.992248v3.mdwn
deleted file mode 100644 (file)
index 5dc046e..0000000
--- a/biblio/10.1101_2020.03.14.992248v3.mdwn
+++ /dev/null
@@ -1,13 +0,0 @@
-[[!meta title="HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads"]]
-[[!tag bioRxiv genome assembly chromosome]]
-
-Sergey Nurk, Brian P Walenz, Arang Rhie, Mitchell R Vollger, Glennis A Logsdon, Robert Grothe, Karen H Miga, Evan E Eichler, Adam M Phillippy, Sergey Koren
-
-bioRxiv 2020.03.14.992248; doi: https://doi.org/10.1101/2020.03.14.992248 
-
-HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
-
-[[!doi 10.1101/2020.03.14.992248v3 desc="“HiCanu modifies the input reads by
-compressing every homopolymer to a single nucleotide.”  “Outputs contigs as
-“pseudo-haplotypes” that preserve local allelic phasing but may switch between
-haplotypes”"]]

diff --git a/biblio/32801147.mdwn b/biblio/32801147.mdwn
new file mode 100644 (file)
index 0000000..32b67e7
--- /dev/null
+++ b/biblio/32801147.mdwn
@@ -0,0 +1,13 @@
+[[!meta title="HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads"]]
+[[!tag genome assembly chromosome]]
+
+Sergey Nurk, Brian P Walenz, Arang Rhie, Mitchell R Vollger, Glennis A Logsdon, Robert Grothe, Karen H Miga, Evan E Eichler, Adam M Phillippy, Sergey Koren
+
+Genome Res. 2020 Sep;30(9):1291-1305. doi:10.1101/gr.263566.120
+
+HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
+
+[[!pmid  32801147 desc="“HiCanu modifies the input reads by
+compressing every homopolymer to a single nucleotide.”  “Outputs contigs as
+“pseudo-haplotypes” that preserve local allelic phasing but may switch between
+haplotypes”"]]

diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn
index 7c18baab5ac64e671f0a1f33f53907495057372a..0ed2af287ea5c531015c21e07b63fab5bd317250 100644 (file)
--- a/tags/assembly.mdwn
+++ b/tags/assembly.mdwn
@@ -23,6 +23,10 @@ fast. Shasta assemblies tend to be more fragmented, but have less disagreement
 with the reference.  Shasta also comes with polishing modules similar to Racon
 and Medaka, but also  to be faster. 
 
+The HiCanu assembler ([[Nurk, Walenz and coll., 2020|biblio/32801147]]) can
+take advantage of high-accuracy sequences such as the ones of the PacBio HiFi
+platform, to assemble multiple variants of the same locus.
+
 Some genome assemblers produce a graph file that can be visualised
 with tools such as Bandage [[Wick and coll., 2015|biblio/26099265]].