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+[[!meta title="RaGOO: fast and accurate reference-guided scaffolding of draft genomes."]]
+[[!tag assembly software]]
+
+Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC.
+
+Genome Biol. 2019 Oct 28;20(1):224. doi:10.1186/s13059-019-1829-6
+
+RaGOO: fast and accurate reference-guided scaffolding of draft genomes.
+
+[[!pmid 31661016 desc="Aligns contigs to a reference genome with minimap2, and resolves structural variants with a modified version of Assemblytics that uses minimap2."]]

diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn
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--- a/tags/assembly.mdwn
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@@ -24,7 +24,10 @@ coll., 2014|biblio/24931998]], [[Kolmogorov and coll., 2018|biblio/30341161]])
 can take multiple reference genomes to guide the assembly of one target.
 Polymorphisms unique to the target genome can be recovered, but chromosome
 fusions are typically hard to detect.  Compared to version 1, version 2 infers
-phylogenetic relationships between the reference genomes automatically.
+phylogenetic relationships between the reference genomes automatically.  An
+alterative reference-guided assembler, RagOO ([[Alonge and coll.,
+2019|biblio/31661016]]) is reported to be faster, but can only take a single
+reference.
 
 The HaploMerger2 pipeline ([[Huang and coll., 2017|biblio/28407147]]) takes a
 diploid assembly and outputs a reference and an alternative sub-assembly for