for the comparison of multiple Nanopore runs on the same plot, to assess if
read length is satisfactory.
-The Flye assembler ([[Kolmogorov and coll, bioRxiv
-2018|biblio/30936562]]) creates an A-Bruijn (assembly) graph from draft
-contigs using long error-prone reads, untangles the graph by resolving repeats,
-and then uses it to refine the contings and increase their accuracy. (The
-predecessor of Flye, ABruijn, was reported by [[Istace and coll.
-(2017)|biblio/28369459]] to be able to assemble mitochondrial genomes, unlike
-Canu and other assemblers.)
+The Flye assembler ([[Kolmogorov and coll. (2018)|biblio/30936562]]) creates an
+A-Bruijn (assembly) graph from draft contigs using long error-prone reads,
+untangles the graph by resolving repeats, and then uses it to refine the
+contings and increase their accuracy. (The predecessor of Flye, ABruijn, was
+reported by [[Istace and coll. (2017)|biblio/28369459]] to be able to assemble
+mitochondrial genomes, unlike Canu and other assemblers.)
After assembly, the contigs can be further polished with Racon ([[Vaser, Sović,
Nagarajan and Šikić, 2017|biblio/28100585]]).