This one too

diff --git a/biblio/10.1101_2020.05.07.078311.mdwn b/biblio/10.1101_2020.05.07.078311.mdwn
deleted file mode 100644 (file)
index be6a0ea..0000000
--- a/biblio/10.1101_2020.05.07.078311.mdwn
+++ /dev/null
@@ -1,10 +0,0 @@
-[[!meta title="Conservative route to genome compaction in a miniature annelid"]]
-[[!tag genome synteny]]
-
-José M. Martín-Durán, Bruno C. Vellutini, Ferdinand Marlétaz, Viviana Cetrangolo, Nevena Cvetesic, Daniel Thiel, Simon Henriet, Xavier Grau-Bové, Allan M. Carrillo-Baltodano, Wenjia Gu, Alexandra Kerbl, Yamile Marquez, Nicolas Bekkouche, Daniel Chourrout, Jose Luis Gómez-Skarmeta, Manuel Irimia, Boris Lenhard, Katrine Worsaae, Andreas Hejnol
-
-bioRxiv 2020.05.07.078311; doi:10.1101/2020.05.07.078311 
-
-Conservative route to genome compaction in a miniature annelid
-
-[[!doi 10.1101/2020.05.07.078311 desc="Genome assembly (PacBio, 73.8 Mb, 95.8% BUSCO genes, 2.24 Mb N50, 4.87% transposable elements, 14,203 protein-coding genes) for the annelid Dimorphilus gyrociliatus, a meiobenthic segmented worm.  Synteny with the scallop genome is visible.  The Hox cluster is present and lacks only one gene, post1.  However, in situ hybridisation suggests lack of temporal colinearity.  The Myc pathway  “lacks the regulators mad (in D. gyrociliatus) and mnt (in all Dinophilidae), a condition also shared with the appendicularian O. dioica”.  “Open chromatin regions [ATAC-seq peaks] are short and mostly found in promoters.”  “Promoters [CAGE] are narrow (<150 bp) and use pyrimidine-purine dinucleotides as preferred initiators.”"]]

diff --git a/biblio/33199869.mdwn b/biblio/33199869.mdwn
new file mode 100644 (file)
index 0000000..c15d569
--- /dev/null
+++ b/biblio/33199869.mdwn
@@ -0,0 +1,10 @@
+[[!meta title="Conservative route to genome compaction in a miniature annelid"]]
+[[!tag genome synteny]]
+
+José M. Martín-Durán, Bruno C. Vellutini, Ferdinand Marlétaz, Viviana Cetrangolo, Nevena Cvetesic, Daniel Thiel, Simon Henriet, Xavier Grau-Bové, Allan M. Carrillo-Baltodano, Wenjia Gu, Alexandra Kerbl, Yamile Marquez, Nicolas Bekkouche, Daniel Chourrout, Jose Luis Gómez-Skarmeta, Manuel Irimia, Boris Lenhard, Katrine Worsaae, Andreas Hejnol
+
+Nat Ecol Evol. 2021 Feb;5(2):231-242. doi: 10.1038/s41559-020-01327-6
+
+Conservative route to genome compaction in a miniature annelid
+
+[[!pmid 33199869 10.1101/2020.05.07.078311 desc="Genome assembly (PacBio, 73.8 Mb, 95.8% BUSCO genes, 2.24 Mb N50, 4.87% transposable elements, 14,203 protein-coding genes) for the annelid Dimorphilus gyrociliatus, a meiobenthic segmented worm.  Synteny with the scallop genome is visible.  The Hox cluster is present and lacks only one gene, post1.  However, in situ hybridisation suggests lack of temporal colinearity.  The Myc pathway  “lacks the regulators mad (in D. gyrociliatus) and mnt (in all Dinophilidae), a condition also shared with the appendicularian O. dioica”.  “Open chromatin regions [ATAC-seq peaks] are short and mostly found in promoters.”  “Promoters [CAGE] are narrow (<150 bp) and use pyrimidine-purine dinucleotides as preferred initiators.”"]]

diff --git a/tags/synteny.mdwn b/tags/synteny.mdwn
index b0d18debe314972ea933a165f27723a5aea870f2..c98378ba76a8ff7fa064748049db401d7b695b12 100644 (file)
--- a/tags/synteny.mdwn
+++ b/tags/synteny.mdwn
@@ -84,7 +84,7 @@ Chiton species of very similar morphology can have different karyotypes
    chordate chromosomes.  _Drosophila_ has no synteny with scallop, but _C.
    elegans_ still has some [[Wang and coll., 2017|biblio/28812685]].  The annelid
    worm _Dimorphilus gyrociliatus_ also has
-   ([[Martín-Durán and coll., 2020|biblio/10.1101_2020.05.07.078311]]).
+   ([[Martín-Durán and coll., 2021|biblio/33199869]]).
 
  - The ancestral amniote has 49 chromosomes ([[Sacerdot and coll., 2018|biblio/30333059]]).