--- /dev/null
+[[!meta title="Regulation of average length of complex PCR product."]]
+[[!tag PCR amplification]]
+
+Nucleic Acids Res. 1999 Sep 15;27(18):e23.
+
+Shagin DA, Lukyanov KA, Vagner LL, Matz MV.
+
+Regulation of average length of complex PCR product.
+
+[[!pmid 10471753 desc="Amplify preferentially long PCR product with a single
+primer. Shorter molecules have a higher probability of undergoing
+inhibitory intramolecular interactions. (suppressive PCR)"]]
* Says that exponential (65+25 cycles) is more faithful than linear.
* Limits [dNTP] to produce only 3' cDNA that are a few hundrer base pairs long.
-10471753
-Amplify preferentially long PCR product with a single
-primer. Shorter molecules have a higher probability of undergoing
-inhibitory intramolecular interactions.
-
http://www.plosbiology.org/plosonline/?request=get-document&doi=10.1371%2Fjournal.pbio.0020178
ggcacgcga/cc => C-box for dro hairy.
12711698 [amplification] [tracked]
Uses T3N9 instead of T7dT during all the RT reactions. No 3' bias. Efficient on degraded RNA. Independant of polyadenylation (useful for non-polyA genes, like histones).
-12560512 [amplification] [tracked]
-«Semi-linear» Taq polymerase amplification used on the cDNA sample at the labelling step.
-
-14602935 [amplification] [tracked]
-Performs SMART, then exponential PCR, then random-primed klenow labelling.
-
-12398200 [amplification]
-Advocates a systematic round of RNA amplificatin, becaus it reduces interarray variability.
-
15205470 [libraries] [tracked]
T4 RNA ligase reaction efficiency improved by PEG and pre-adenylation.
direct labelling method for big quantities: RNA fragmentation, then T4 RNA ligation of biotinylated oligos.
15899964 [promoters]
ChIP on chip focused on the preinitiation complexes of the ENCODE regions.
-10471753 [amplification]
-Single-primer PCR with a moderate suppressive effect can be used to regulate the product size.
-
16407397 [enhancers]
Idenification of conserved enhancers of shh hundreds of kp far of the coding sequence.