NanoSV

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+[[!meta title="Mapping and phasing of structural variation in patient genomes using nanopore sequencing."]]
+[[!tag LAST software variants]]
+
+Cretu Stancu M, van Roosmalen MJ, Renkens I, Nieboer MM, Middelkamp S, de Ligt
+J, Pregno G, Giachino D, Mandrile G, Espejo Valle-Inclan J, Korzelius J, de
+Bruijn E, Cuppen E, Talkowski ME, Marschall T, de Ridder J, Kloosterman WP.
+
+Nat Commun. 2017 Nov 6;8(1):1326. doi:10.1038/s41467-017-01343-4
+
+Mapping and phasing of structural variation in patient genomes using nanopore sequencing.
+
+[[!pmid 29109544 desc="Primary paper for NanoSV.  Fed with last-split alignments."]]

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  - `last-split` ([[Frith and Kawaguchi, 2017|biblio/25994148]]): heuristic
    algorithm inspired by the “repeated matches algorithm” of Durbin and coll.
-   (1998).
+   (1998).  Its output is also used by third-party tool NanoSV ([[Cretu and
+   coll., 2017|biblio/29109544]].
 
  - `last-train` ([[Hamada, Ono, Asai and Frith, 2017|biblio/28039163]]):
    estimation of alignment parameters.