Read some time ago.

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+[[!meta title="Targeted sequencing for gene discovery and quantification using RNA CaptureSeq."]]
+[[!tag capture RNA-seq method]]
+
+Mercer TR, Clark MB, Crawford J, Brunck ME, Gerhardt DJ, Taft RJ, Nielsen LK, Dinger ME, Mattick JS
+
+Nat Protoc. 2014 May;9(5):989-1009. doi:10.1038/nprot.2014.058
+
+Targeted sequencing for gene discovery and quantification using RNA CaptureSeq.
+
+[[!pmid 24705597 desc="Temperature control is essential"]]

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+[[!meta title="Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms."]]
+[[!tag sequence alignment]]
+
+Patro R, Mount SM, Kingsford C.
+
+Nat Biotechnol. 2014 May;32(5):462-4. doi: 10.1038/nbt.2862
+
+Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.
+
+[[!pmid 24752080 desc="k-mer counting"]]