XbaI

diff --git a/biblio/29482522.mdwn b/biblio/29482522.mdwn
new file mode 100644 (file)
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+[[!meta title="Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate."]]
+[[!tag Oikopleura CAGE promoter motif]]
+
+Danks GB, Navratilova P, Lenhard B, Thompson EM 
+
+BMC Genomics. 2018 Feb 26;19(1):164. doi:10.1186/s12864-018-4504-5
+
+Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate.
+
+[[!pmid 29482522 desc="“369/502 (73.5%) of genes that are specifically expressed in the testis are associated with a TCTAGA promoter element, compared to 100/906 (11.0%) that are specific to the ovary and 7/275 (2.5%) that are specific to the trunk.” “Strong association of gene body DNA methylation with TATA-dependent promoters in O. dioica.” "]]

diff --git a/tags/Oikopleura.mdwn b/tags/Oikopleura.mdwn
index ed52be9b33d9aaf68fc84042a0b9ca6beb1156bf..930c9e77c720ccc86c6436e11d19518bd76c6b9e 100644 (file)
--- a/tags/Oikopleura.mdwn
+++ b/tags/Oikopleura.mdwn
@@ -32,6 +32,9 @@ Transcriptome
    times in the genome ([[Ganot et al., 2004|biblio/15314184]]).
  - A study using CAGE found that 39% of annotated gene models are trans-spliced with the
    SL and that 42% of SL transcripts are monocistronic ([[Danks et al., 2015|biblio/25525214]]).
+ - A `TCTAGA` promoter element is found in 73.5% of the non-trans-spliced genes detected with
+   CAGE in testis ([[Danks et al, 2018|biblio/29482522]]).
+
 
 Development
 -----------