SALSA2

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+[[!meta title="Integrating Hi-C links with assembly graphs for chromosome-scale assembly"]]
+[[!tag genome assembly method]]
+
+Jay Ghurye, Arang Rhie, Brian P. Walenz, Anthony Schmitt, Siddarth Selvaraj, Mihai Pop, Adam M. Phillippy, Sergey Koren
+
+bioRxiv, first February 07, 2018.
+
+Integrating Hi-C links with assembly graphs for chromosome-scale assembly
+
+[[!doi 10.1101/261149 desc="Uses unitigs and the assembly graph as input."]]

diff --git a/tags/assembly.mdwn b/tags/assembly.mdwn
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@@ -35,7 +35,9 @@ assembly_”.
 
 SALSA (Simple AssembLy ScAffolder, [Ghurye and coll., 2017|biblio/28701198]])
 takes Hi-C data and contigs as input and scaffolds them under the hypothesis
-that most contact points are due to local (same-chromosome) proximity.
+that most contact points are due to local (same-chromosome) proximity.  Version
+2 of SALSA uses unitigs and the assembly graph as input ([[Ghurye and coll.,
+2018|biblio/10.1101_261149]]).
 
 BUSCO ([[Simão and coll., 2015|biblio/26059717]], [[Waterhouse and coll.,
 2017|biblio/29220515]]) assesses the presence of evolutionary conserved single-copy